STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nreBOxygen sensor histidine kinase NreB. (397 aa)    
Predicted Functional Partners:
nreC2
Oxygen regulatory protein NreC.
 
 0.980
degU
Transcriptional regulatory protein DegU.
 
 0.916
devR1
Transcriptional regulatory protein DevR (DosR).
 
 0.915
devR2
Transcriptional regulatory protein DevR (DosR).
 
 0.915
nreC1
Oxygen regulatory protein NreC.
 
 0.913
liaS
Sensor histidine kinase LiaS.
  
  
  0.835
desK1
Sensor histidine kinase DesK.
  
  
  0.834
desK2
Sensor histidine kinase DesK.
  
  
  0.834
FEAC_24240
Blue-light-activated protein.
   
 0.822
devS
Redox sensor histidine kinase response regulator DevS.
 
  
  0.817
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.