STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaG11,2-epoxyphenylacetyl-CoA isomerase. (268 aa)    
Predicted Functional Partners:
paaZ2
Bifunctional protein PaaZ.
 
  0.888
fadB23
3-hydroxybutyryl-CoA dehydrogenase.
  0.878
gmr6
Cyclic di-GMP phosphodiesterase Gmr.
    
  0.851
cph25
Phytochrome-like protein cph2.
    
  0.851
fadB21
3-hydroxybutyryl-CoA dehydrogenase.
 
  0.842
fadB22
3-hydroxybutyryl-CoA dehydrogenase.
 
  0.830
benC
Benzoate 1,2-dioxygenase electron transfer component.
  
 
 0.829
paaF2
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 
0.822
FEAC_24240
Blue-light-activated protein.
    
 0.813
paaJ
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.791
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.