lipM protein (Ferrimicrobium acidiphilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lipM

Octanoyltransferase LipM. (226 aa)

Predicted Functional Partners:

kgd

0.947

lipA

0.938

FEAC_15830

0.773

gcvH1

0.687

gcvH2

0.687

gcvH3

0.687

FEAC_01740

0.665

sucB

0.647

pdhC1

0.647

pdhC2

0.647

Your Current Organism:

Ferrimicrobium acidiphilum

NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FEAC_01740	lipM	FEAC_01740	FEAC_15820	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).	Octanoyltransferase LipM.	0.665
FEAC_15830	lipM	FEAC_15830	FEAC_15820	Hypothetical protein.	Octanoyltransferase LipM.	0.773
gcvH1	gcvH2	FEAC_03410	FEAC_11510	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.851
gcvH1	gcvH3	FEAC_03410	FEAC_11520	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Glycine cleavage system H protein.	0.861
gcvH1	kgd	FEAC_03410	FEAC_24670	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Multifunctional 2-oxoglutarate metabolism enzyme.	0.943
gcvH1	lipA	FEAC_03410	FEAC_01060	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives; Belongs to the LipB family.	0.963
gcvH1	lipM	FEAC_03410	FEAC_15820	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Octanoyltransferase LipM.	0.687
gcvH1	pdhC1	FEAC_03410	FEAC_07060	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.	0.445
gcvH1	pdhC2	FEAC_03410	FEAC_13790	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.	0.445
gcvH1	sucB	FEAC_03410	FEAC_01070	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex.	0.523
gcvH2	gcvH1	FEAC_11510	FEAC_03410	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.851
gcvH2	gcvH3	FEAC_11510	FEAC_11520	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Glycine cleavage system H protein.	0.964
gcvH2	kgd	FEAC_11510	FEAC_24670	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Multifunctional 2-oxoglutarate metabolism enzyme.	0.943
gcvH2	lipA	FEAC_11510	FEAC_01060	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives; Belongs to the LipB family.	0.962
gcvH2	lipM	FEAC_11510	FEAC_15820	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Octanoyltransferase LipM.	0.687
gcvH2	pdhC1	FEAC_11510	FEAC_07060	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.	0.445
gcvH2	pdhC2	FEAC_11510	FEAC_13790	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.	0.445
gcvH2	sucB	FEAC_11510	FEAC_01070	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex.	0.523
gcvH3	gcvH1	FEAC_11520	FEAC_03410	Glycine cleavage system H protein.	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.861
gcvH3	gcvH2	FEAC_11520	FEAC_11510	Glycine cleavage system H protein.	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.964