STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikANickel-binding periplasmic protein precursor. (559 aa)    
Predicted Functional Partners:
oppD1
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
 
 0.958
dppB2
Dipeptide transport system permease protein DppB.
 
  0.922
ddpF
Putative D,D-dipeptide transport ATP-binding protein DdpF; Belongs to the ABC transporter superfamily.
 
  0.901
dppC
Dipeptide transport system permease protein DppC.
  
  0.886
oppB
Oligopeptide transport system permease protein OppB.
  
  0.882
nikB
Nickel transport system permease protein NikB.
  
  0.881
oppD3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
  0.688
oppF2
Oligopeptide transport ATP-binding protein OppF.
 
 
  0.573
dppA
D-aminopeptidase.
    
  0.555
oppC2
Oligopeptide transport system permease protein OppC.
   
  0.523
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.