STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF2Putative ribosomal N-acetyltransferase YdaF. (301 aa)    
Predicted Functional Partners:
gltB1
Glutamate synthase [NADPH] large chain.
   
 
 0.826
pksH
Putative polyketide biosynthesis enoyl-CoA hydratase PksH.
 
  
  0.733
FEAC_23450
Pyridoxamine 5'-phosphate oxidase.
 
      0.623
nudJ
Phosphatase NudJ; Belongs to the Nudix hydrolase family.
       0.522
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
    
  0.519
ydaF1
Putative ribosomal N-acetyltransferase YdaF.
  
     0.513
FEAC_05820
Integrase core domain protein.
    
  0.498
FEAC_14280
Phosphotransferase enzyme family protein.
    
  0.498
FEAC_14480
Phosphotransferase enzyme family protein.
    
  0.498
FEAC_14490
Hypothetical protein.
    
  0.498
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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