STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleDResponse regulator PleD. (334 aa)    
Predicted Functional Partners:
rpfG
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.992
cph24
Phytochrome-like protein cph2.
 
 
  0.976
cph21
Phytochrome-like protein cph2.
 0.969
ycgF
Blue light- and temperature-regulated antirepressor YcgF.
 
 
  0.961
gmr6
Cyclic di-GMP phosphodiesterase Gmr.
 
0.939
cph25
Phytochrome-like protein cph2.
0.939
gmr7
Cyclic di-GMP phosphodiesterase Gmr.
 
0.905
yliE
Putative cyclic di-GMP phosphodiesterase YliE.
 
 
  0.858
yjcC
Putative membrane protein YjcC.
  
 
  0.825
adrB
Putative cyclic-di-GMP phosphodiesterase AdrB.
 
 
  0.824
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.