STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dthadhD-threo-3-hydroxyaspartate dehydratase. (381 aa)    
Predicted Functional Partners:
psdht
Phenylserine dehydratase.
 
  
  0.852
FEAC_26840
Hypothetical protein.
       0.625
FEAC_05990
Aspartate aminotransferase.
    
  0.610
thrC
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
    
  0.584
FEAC_26850
Hypothetical protein.
       0.576
FEAC_14400
Short chain dehydrogenase.
    
  0.496
cbiX
Sirohydrochlorin cobaltochelatase.
   
 
  0.481
FEAC_12570
Putative endoribonuclease L-PSP.
 
   
 0.471
cls
Cardiolipin synthase.
   
    0.452
ilvB1
Acetolactate synthase large subunit IlvB1.
  
 
  0.420
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.