STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA2Oligopeptide-binding protein AppA precursor. (564 aa)    
Predicted Functional Partners:
nikB
Nickel transport system permease protein NikB.
 
  0.954
dppC
Dipeptide transport system permease protein DppC.
 
  0.943
oppD1
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
 
 0.905
oppB
Oligopeptide transport system permease protein OppB.
  
  0.882
dppB2
Dipeptide transport system permease protein DppB.
  
  0.878
oppD3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  0.846
oppF2
Oligopeptide transport ATP-binding protein OppF.
 
  0.806
ddpF
Putative D,D-dipeptide transport ATP-binding protein DdpF; Belongs to the ABC transporter superfamily.
 
  0.713
dppA
D-aminopeptidase.
    
  0.555
xynB
Beta-xylosidase.
 
     0.530
Your Current Organism:
Ferrimicrobium acidiphilum
NCBI taxonomy Id: 1121877
Other names: F. acidiphilum DSM 19497, Ferrimicrobium acidiphilum DSM 19497
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