STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF09396.1Outer membrane receptor proteins, mostly Fe transport. (819 aa)    
Predicted Functional Partners:
SHF40368.1
Hypothetical protein.
  
     0.568
SHF32584.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
   0.554
SHE99578.1
Conserved hypothetical protein.
  
     0.504
SHF09369.1
Hypothetical protein; Belongs to the UPF0234 family.
       0.488
SHF09424.1
Outer membrane receptor proteins, mostly Fe transport.
 
    
0.488
SHF33294.1
Protein TonB.
  
 
   0.478
SHF77261.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.466
SHF35209.1
SusD family protein.
  
 
   0.451
SHF62254.1
Lipid-binding putative hydrolase.
    
   0.448
SHE74148.1
Hypothetical protein.
  
 
   0.444
Your Current Organism:
Flavisolibacter ginsengisoli
NCBI taxonomy Id: 1121884
Other names: F. ginsengisoli DSM 18119, Flavisolibacter ginsengisoli DSM 18119
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.