STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPAL_2059Unannotated protein. (470 aa)    
Predicted Functional Partners:
ribD
Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.688
yhbY
Unannotated protein.
  
  
 0.665
GPAL_2227
Unannotated protein.
  
     0.661
ybeB
Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.647
aroE
Unannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.638
GPAL_2060
Unannotated protein.
 
     0.580
alr
Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.553
GPAL_3064
Unannotated protein.
  
  
  0.549
ygaD
Unannotated protein; Belongs to the CinA family.
  
 
 0.518
GPAL_2058
Unannotated protein.
       0.512
Your Current Organism:
Glaciecola pallidula
NCBI taxonomy Id: 1121922
Other names: G. pallidula DSM 14239 = ACAM 615, Glaciecola pallidula ACAM 615, Glaciecola pallidula ACAM 615 = DSM 14239, Glaciecola pallidula DSM 14239, Glaciecola pallidula DSM 14239 = ACAM 615, Glaciecola pallidula IC079, marine psychrophile IC079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.