STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (363 aa)    
Predicted Functional Partners:
serA
Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.991
pdxB
Unannotated protein; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
  
 0.991
serB
Unannotated protein.
  
 
 0.984
pdxA
Unannotated protein; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
     
 0.967
thrC
Unannotated protein.
   
 0.957
aroA
Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
  
 0.939
cysK-2
Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.934
pheA
Unannotated protein.
  
  
 0.926
tyrA
Unannotated protein.
  
  
 0.859
GPAL_3637
Unannotated protein.
  
 0.848
Your Current Organism:
Glaciecola pallidula
NCBI taxonomy Id: 1121922
Other names: G. pallidula DSM 14239 = ACAM 615, Glaciecola pallidula ACAM 615, Glaciecola pallidula ACAM 615 = DSM 14239, Glaciecola pallidula DSM 14239, Glaciecola pallidula DSM 14239 = ACAM 615, Glaciecola pallidula IC079, marine psychrophile IC079
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