STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPC03821.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (260 aa)    
Predicted Functional Partners:
EPC03820.1
Organic solvent ABC transporter ATP-binding protein; ABC transporter maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.999
EPC03822.1
Organic solvent ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.999
EPC03824.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.989
EPC03823.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.986
EPC00478.1
Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.965
EPC00487.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.965
EPC03814.1
Lipopolysaccharide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.844
EPC03816.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.734
EPC03817.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
    0.728
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
     0.709
Your Current Organism:
Halomonas anticariensis
NCBI taxonomy Id: 1121939
Other names: H. anticariensis FP35 = DSM 16096, Halomonas anticariensis DSM 16096, Halomonas anticariensis DSM 16096 = FP35, Halomonas anticariensis FP35, Halomonas anticariensis FP35 = DSM 16096
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