STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF71207.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (203 aa)    
Predicted Functional Partners:
SHE62606.1
Glutamate synthase (NADPH) large subunit.
    
 0.867
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.826
SHF63353.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.812
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.800
SHE79591.1
Signal transduction histidine kinase.
   
 0.779
SHE87234.1
Peptidase_C39 like family protein.
    
 
 0.763
SHF70826.1
Adsorption protein A.
    
 
 0.762
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.760
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.746
SHF71244.1
Protein of unknown function.
 
     0.743
Your Current Organism:
Halomonas ilicicola
NCBI taxonomy Id: 1121942
Other names: H. ilicicola DSM 19980, Halomonas ilicicola DSM 19980
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.