rnc protein (Hespellia stercorisuis) - STRING interaction network

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rnc

RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (228 aa)

Predicted Functional Partners:

rpmF

0.981

rplS

0.978

rpmA

0.975

rpsF

0.975

rplD

0.973

rpsB

0.973

rplM

0.973

rpsI

0.973

rpsO

0.972

rpsP

0.972

Your Current Organism:

Hespellia stercorisuis

NCBI taxonomy Id: 1121950
Other names: H. stercorisuis DSM 15480, Hespellia stercorisuis DSM 15480

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rnc	rplD	SAMN02745243_01768	SAMN02745243_00641	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.973
rnc	rplM	SAMN02745243_01768	SAMN02745243_03525	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.973
rnc	rplS	SAMN02745243_01768	SAMN02745243_01861	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.978
rnc	rpmA	SAMN02745243_01768	SAMN02745243_01670	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.975
rnc	rpmF	SAMN02745243_01768	SAMN02745243_01765	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.981
rnc	rpsB	SAMN02745243_01768	SAMN02745243_02146	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.973
rnc	rpsF	SAMN02745243_01768	SAMN02745243_02033	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.975
rnc	rpsI	SAMN02745243_01768	SAMN02745243_03526	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.973
rnc	rpsO	SAMN02745243_01768	SAMN02745243_00092	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.972
rnc	rpsP	SAMN02745243_01768	SAMN02745243_01857	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.972
rplD	rnc	SAMN02745243_00641	SAMN02745243_01768	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.973
rplD	rplM	SAMN02745243_00641	SAMN02745243_03525	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplD	rplS	SAMN02745243_00641	SAMN02745243_01861	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplD	rpmA	SAMN02745243_00641	SAMN02745243_01670	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplD	rpmF	SAMN02745243_00641	SAMN02745243_01765	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.993
rplD	rpsB	SAMN02745243_00641	SAMN02745243_02146	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rplD	rpsF	SAMN02745243_00641	SAMN02745243_02033	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.996
rplD	rpsI	SAMN02745243_00641	SAMN02745243_03526	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.998
rplD	rpsO	SAMN02745243_00641	SAMN02745243_00092	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplD	rpsP	SAMN02745243_00641	SAMN02745243_01857	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.996

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