STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK13629.1Protein of unknown function. (158 aa)    
Predicted Functional Partners:
SHL98359.1
Putative porin.
 
     0.739
SHK52536.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.736
SHK94338.1
Family of unknown function.
  
     0.696
SHM15484.1
Outer membrane protein assembly factor BamA.
  
     0.688
SHL73987.1
TonB dependent receptor.
  
     0.670
SHK84944.1
Cell division protein FtsQ.
  
     0.665
SHK16028.1
Protein of unknown function.
  
     0.652
SHL20122.1
Hypothetical protein.
  
     0.650
SHK81554.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.648
SHL03807.1
Hypothetical protein.
  
     0.648
Your Current Organism:
Hymenobacter psychrotolerans
NCBI taxonomy Id: 1121959
Other names: H. psychrotolerans DSM 18569, Hymenobacter psychrotolerans DSM 18569, Hymenobacter psychrotolerans Tibet-IIU11, Hymenobacter sp. Tibet-IIU11
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