BWR60_07745 protein (Inquilinus limosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BWR60_07745

Unannotated protein. (124 aa)

Predicted Functional Partners:

aat

0.592

BWR60_07750

0.592

BWR60_03360

0.438

BWR60_05045

0.438

BWR60_06755

0.438

BWR60_12775

0.438

Your Current Organism:

Inquilinus limosus

NCBI taxonomy Id: 1122125
Other names: I. limosus DSM 16000, Inquilinus limosus DSM 16000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWR60_03360	BWR60_07745	GCA_000423185_02990	GCA_000423185_00396	Unannotated protein; Maintains high levels of reduced glutathione.	Unannotated protein.	0.438
BWR60_05045	BWR60_07745	GCA_000423185_03645	GCA_000423185_00396	Unannotated protein.	Unannotated protein.	0.438
BWR60_05045	BWR60_12775	GCA_000423185_03645	GCA_000423185_06847	Unannotated protein.	Unannotated protein.	0.884
BWR60_06755	BWR60_07745	GCA_000423185_04657	GCA_000423185_00396	Unannotated protein.	Unannotated protein.	0.438
BWR60_06755	BWR60_12775	GCA_000423185_04657	GCA_000423185_06847	Unannotated protein.	Unannotated protein.	0.798
BWR60_07745	BWR60_03360	GCA_000423185_00396	GCA_000423185_02990	Unannotated protein.	Unannotated protein; Maintains high levels of reduced glutathione.	0.438
BWR60_07745	BWR60_05045	GCA_000423185_00396	GCA_000423185_03645	Unannotated protein.	Unannotated protein.	0.438
BWR60_07745	BWR60_06755	GCA_000423185_00396	GCA_000423185_04657	Unannotated protein.	Unannotated protein.	0.438
BWR60_07745	BWR60_07750	GCA_000423185_00396	GCA_000423185_00395	Unannotated protein.	Unannotated protein.	0.592
BWR60_07745	BWR60_12775	GCA_000423185_00396	GCA_000423185_06847	Unannotated protein.	Unannotated protein.	0.438
BWR60_07745	aat	GCA_000423185_00396	GCA_000423185_00394	Unannotated protein.	Unannotated protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	0.592
BWR60_07750	BWR60_07745	GCA_000423185_00395	GCA_000423185_00396	Unannotated protein.	Unannotated protein.	0.592
BWR60_07750	aat	GCA_000423185_00395	GCA_000423185_00394	Unannotated protein.	Unannotated protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	0.773
BWR60_12775	BWR60_05045	GCA_000423185_06847	GCA_000423185_03645	Unannotated protein.	Unannotated protein.	0.884
BWR60_12775	BWR60_06755	GCA_000423185_06847	GCA_000423185_04657	Unannotated protein.	Unannotated protein.	0.798
BWR60_12775	BWR60_07745	GCA_000423185_06847	GCA_000423185_00396	Unannotated protein.	Unannotated protein.	0.438
aat	BWR60_07745	GCA_000423185_00394	GCA_000423185_00396	Unannotated protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Unannotated protein.	0.592
aat	BWR60_07750	GCA_000423185_00394	GCA_000423185_00395	Unannotated protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Unannotated protein.	0.773