STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF98975.1Membrane dipeptidase. (354 aa)    
Predicted Functional Partners:
SHF98937.1
Nitroreductase.
       0.768
SHE82957.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.709
SHF56965.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.709
SHE86098.1
Peptide/nickel transport system substrate-binding protein.
  
     0.528
SHF98891.1
Allantoin racemase.
       0.464
SHF98817.1
Putative spermidine/putrescine transport system permease protein.
       0.413
SHF98853.1
Putative spermidine/putrescine transport system permease protein.
       0.413
SHG38423.1
Putative glutamine amidotransferase.
      0.411
Your Current Organism:
Kaistia soli
NCBI taxonomy Id: 1122133
Other names: K. soli DSM 19436, Kaistia soli 5YN9-8, Kaistia soli DSM 19436, Kaistia soli NBRC 106436
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.