STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG83782.1Murein L,D-transpeptidase YafK. (435 aa)    
Predicted Functional Partners:
SHF30676.1
Hypothetical protein.
  
     0.737
SHE73295.1
Invasion protein IalB, involved in pathogenesis.
  
     0.695
SHF77475.1
Hypothetical protein.
  
    0.689
SHF29907.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.668
SHF90573.1
Invasion protein IalB, involved in pathogenesis.
  
     0.624
SHG71194.1
Uncharacterized membrane protein.
  
     0.620
SHE72431.1
Hypothetical protein.
  
     0.616
SHG76948.1
Flagellar export protein FliJ.
  
     0.612
SHG49093.1
Outer membrane immunogenic protein.
  
     0.585
SHG31462.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
 
    0.578
Your Current Organism:
Kaistia soli
NCBI taxonomy Id: 1122133
Other names: K. soli DSM 19436, Kaistia soli 5YN9-8, Kaistia soli DSM 19436, Kaistia soli NBRC 106436
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.