STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY10520.1Phosphoglycerol transferase MdoB. (698 aa)    
Predicted Functional Partners:
SDY39932.1
Response regulator NasT.
  
     0.640
SDY28466.1
Foldase protein PrsA.
 
   
 0.621
SDX87228.1
Zinc-ribbon domain-containing protein.
  
     0.557
SDY21348.1
Hypothetical protein.
  
     0.499
SDY70885.1
Hypothetical protein.
  
     0.494
SDY16684.1
Tetratricopeptide repeat-containing protein.
  
     0.461
SDY20545.1
N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase.
 
   
 0.435
SDY05981.1
Uncharacterized protein.
  
     0.425
SDY10553.1
butyryl-CoA:acetate CoA-transferase.
       0.412
Your Current Organism:
Lachnobacterium bovis
NCBI taxonomy Id: 1122142
Other names: L. bovis DSM 14045, Lachnobacterium bovis DSM 14045
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.