STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY16382.1Small conductance mechanosensitive channel. (319 aa)    
Predicted Functional Partners:
SDY16407.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.576
serC
Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
       0.545
SDY16360.1
Cold shock protein (beta-ribbon, CspA family).
       0.512
SDY16459.1
Acetolactate synthase, large subunit.
  
    0.505
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.439
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.418
SDY20751.1
Ammonium transporter, Amt family; Belongs to the P(II) protein family.
   
 
 0.411
SDY23670.1
Uncharacterized hydrophobic domain-containing protein.
 
     0.407
Your Current Organism:
Lachnobacterium bovis
NCBI taxonomy Id: 1122142
Other names: L. bovis DSM 14045, Lachnobacterium bovis DSM 14045
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