STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY24766.1Ferredoxin hydrogenase large subunit. (484 aa)    
Predicted Functional Partners:
SDY15556.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.994
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
 0.981
SDY41732.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.968
SDX93165.1
Biotin-requiring enzyme.
     
 0.936
SDX98859.1
4Fe-4S dicluster domain-containing protein.
  
 
 0.921
SDY40985.1
Rubrerythrin.
 
 
 0.911
SDX94673.1
Glutamate synthase (NADPH/NADH) small chain.
  
 0.909
SDX94514.1
Glutamate synthase (NADPH/NADH) small chain.
   
 0.860
SDY37324.1
2-enoate reductase.
    
 0.842
SDY66762.1
Formate C-acetyltransferase.
     
 0.807
Your Current Organism:
Lachnobacterium bovis
NCBI taxonomy Id: 1122142
Other names: L. bovis DSM 14045, Lachnobacterium bovis DSM 14045
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.