STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY30942.1ABC-2 type transport system ATP-binding protein. (240 aa)    
Predicted Functional Partners:
SDY30975.1
Hypothetical protein.
       0.791
SDY30909.1
Aminotransferase class-V.
       0.737
SDY00184.1
Putative ABC transport system ATP-binding protein.
  
     0.731
SDY23265.1
Putative ABC transport system ATP-binding protein.
  
     0.684
SDX99584.1
ABC-2 type transport system ATP-binding protein.
 
     0.628
SDY79757.1
ATP-binding cassette, subfamily C.
  
     0.555
SDY78353.1
ABC transporter.
  
     0.488
ecfA
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
     0.484
SDY56624.1
Sodium transport system permease protein.
 
  
 0.461
SDY30882.1
Hypothetical protein.
       0.419
Your Current Organism:
Lachnobacterium bovis
NCBI taxonomy Id: 1122142
Other names: L. bovis DSM 14045, Lachnobacterium bovis DSM 14045
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.