STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN88901.1Multimodular transpeptidase-transglycosylase PBP 1A. (744 aa)    
Predicted Functional Partners:
KRN88507.1
Multimodular transpeptidase-transglycosylase.
  
  
0.936
KRN89371.1
D-alanyl-d-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.924
recU
Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
    0.900
KRN88567.1
Penicillin-binding protein.
 
 
 0.880
KRN88662.1
Hypothetical protein.
   
 
 0.857
KRN88963.1
Penicillin binding protein 2B.
 
 
0.806
KRN88954.1
Cell division initiation protein.
   
 
 0.720
KRN88648.1
N-acetylmuramoyl-L-alanine amidase.
   
 0.710
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.685
KRN88928.1
Cell division protein; Belongs to the SEDS family.
  
 
 
 0.668
Your Current Organism:
Lactobacillus ceti
NCBI taxonomy Id: 1122146
Other names: L. ceti DSM 22408, Lactobacillus ceti 142-2, Lactobacillus ceti DSM 22408
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.