STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM57553.1Signal transduction diguanylate cyclase. (95 aa)    
Predicted Functional Partners:
KRM57550.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.933
KRM57552.1
Hypothetical protein.
      0.897
KRM57547.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
 
 
 0.821
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.808
KRM57136.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.762
KRM57551.1
NADH oxidase.
  
    0.682
KRM57549.1
Glycosyltransferase.
 
     0.499
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.463
KRM57554.1
Macrolide-efflux protein.
       0.438
KRM57548.1
Hypothetical protein.
       0.421
Your Current Organism:
Lactobacillus malefermentans
NCBI taxonomy Id: 1122149
Other names: L. malefermentans DSM 5705 = KCTC 3548, Lactobacillus malefermentans DSM 5705, Lactobacillus malefermentans DSM 5705 = KCTC 3548, Lactobacillus malefermentans KCTC 3548, Lactobacillus malefermentans KCTC 3548 = DSM 5705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.