STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM59570.1Spo0J-like protein; Belongs to the ParB family. (296 aa)    
Predicted Functional Partners:
KRM59571.1
Chromosome partitioning ATPase.
 
 0.999
KRM55337.1
Chromosome partitioning ATPase.
 
 
 0.937
KRM54973.1
Replication-associated protein RepB.
 
 0.935
KRM57244.1
ATPase involved in chromosome partitioning.
 
 
 0.931
rsmG
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.922
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
    0.816
KRM59569.1
Hypothetical protein.
       0.792
KRM58523.1
DNA segregation ATPase FtsK SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.765
KRM58433.1
DNA segregation ATPase FtsK SpoIIIE related protein; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.751
KRM59567.1
Hypothetical protein.
       0.713
Your Current Organism:
Lactobacillus malefermentans
NCBI taxonomy Id: 1122149
Other names: L. malefermentans DSM 5705 = KCTC 3548, Lactobacillus malefermentans DSM 5705, Lactobacillus malefermentans DSM 5705 = KCTC 3548, Lactobacillus malefermentans KCTC 3548, Lactobacillus malefermentans KCTC 3548 = DSM 5705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.