STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL39983.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
KRL39982.1
HTH containing DNA-binding domain and MocR-like aminotransferase.
 
  
 0.704
KRL39985.1
Hypothetical protein.
 
     0.704
KRL41071.1
Malolactic regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.592
KRL41475.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.554
KRL42281.1
Glutamate synthase large subunit.
  
  
 0.541
KRL40469.1
LysR substrate binding domain protein; Belongs to the LysR transcriptional regulatory family.
  
     0.521
KRL41093.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.517
KRL39984.1
MATE efflux family protein.
  
  
 0.501
KRL41128.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.495
Your Current Organism:
Lactobacillus nagelii
NCBI taxonomy Id: 1122150
Other names: L. nagelii DSM 13675, Lactobacillus nagelii DSM 13675
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.