STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL41830.1Hypothetical protein; Involved in the anomeric conversion of L-rhamnose. (105 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
 
 0.999
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.998
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.939
KRL41828.1
L-rhamnose-proton symport.
 
   
 0.914
KRL41827.1
AraC family transcriptional regulator.
 
   
 0.711
KRL41692.1
Gluconokinase; Belongs to the FGGY kinase family.
  
  
 0.637
KRL41826.1
AraC family transcriptional regulator.
 
   
 0.623
KRL41133.1
Major facilitator superfamily MFS 1.
  
  
 0.608
KRL41811.1
Alfa-l-rhamnosidase.
 
  
 0.507
KRL40995.1
Transcription antiterminator.
   
    0.452
Your Current Organism:
Lactobacillus nagelii
NCBI taxonomy Id: 1122150
Other names: L. nagelii DSM 13675, Lactobacillus nagelii DSM 13675
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