STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL41835.1Hypothetical protein. (375 aa)    
Predicted Functional Partners:
KRL41836.1
Major facilitator superfamily permease.
 
    0.876
KRL41823.1
Transcription regulator.
 
     0.771
KRL41837.1
alpha-L-rhamnosidase.
 
     0.753
KRL41825.1
Transport protein.
 
   
 0.746
KRL42290.1
Hypothetical protein.
  
     0.573
KRL41838.1
Transcriptional regulator sugar kinase.
 
     0.571
KRL41824.1
Hypothetical protein.
 
    0.476
KRL42549.1
Transcription regulator.
 
     0.473
KRL42378.1
Glycopeptide antibiotics resistance protein.
  
     0.472
KRL41635.1
Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.444
Your Current Organism:
Lactobacillus nagelii
NCBI taxonomy Id: 1122150
Other names: L. nagelii DSM 13675, Lactobacillus nagelii DSM 13675
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.