STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL42398.1Phosphatidylglycerophosphatase B. (220 aa)    
Predicted Functional Partners:
KRL42397.1
Hypothetical protein.
 
  
 0.905
KRL42399.1
Hypothetical protein.
     
 0.791
KRL42400.1
Signal transduction histidine kinase.
 
  
 0.736
KRL42404.1
Ferric reductase.
  
    0.673
KRL41484.1
Hypothetical protein.
 
  
 0.593
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.579
KRL40217.1
Hypothetical protein.
 
    0.570
KRL42402.1
Hypothetical protein.
  
     0.560
KRL42403.1
Thiamine biosynthesis membrane-associated lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
     0.512
KRL40311.1
Hypothetical protein.
 
  
 0.482
Your Current Organism:
Lactobacillus nagelii
NCBI taxonomy Id: 1122150
Other names: L. nagelii DSM 13675, Lactobacillus nagelii DSM 13675
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.