STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL40773.1HNH endonuclease domain-containing protein. (261 aa)    
Predicted Functional Partners:
KRL40774.1
Phage terminase small subunit.
 
     0.881
KRL40777.1
Phage portal protein.
 
   
 0.881
KRL40775.1
Phage-related terminase large subunit.
 
     0.880
KRL40779.1
Phage head maturation protease.
 
     0.866
KRL40780.1
HK97 family phage major capsid protein.
 
   
 0.857
KRL40772.1
Hypothetical protein.
       0.773
KRL40788.1
Phage tail tape measure protein.
  
     0.770
KRL40789.1
Phage protein.
  
    0.739
KRL40415.1
Hypothetical protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.731
KRL40771.1
Hypothetical protein.
       0.570
Your Current Organism:
Lactobacillus nagelii
NCBI taxonomy Id: 1122150
Other names: L. nagelii DSM 13675, Lactobacillus nagelii DSM 13675
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.