STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnj-2Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (574 aa)    
Predicted Functional Partners:
FC23_GL000963
Unannotated protein.
  
  
 0.935
rnj
Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
  
 
0.927
FC23_GL000747
Unannotated protein.
       0.788
rny
Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.702
rpsO
Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
 
  
 0.677
tuf
Unannotated protein; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
       0.568
tig
Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
    0.490
FC23_GL000118
Unannotated protein; Belongs to the FtsK/SpoIIIE/SftA family.
 
    0.471
FC23_GL000809
Unannotated protein.
   
 
 0.408
rpsT
Unannotated protein; Binds directly to 16S ribosomal RNA.
     
 0.405
Your Current Organism:
Lactobacillus psittaci
NCBI taxonomy Id: 1122152
Other names: L. psittaci DSM 15354, Lactobacillus psittaci CIP 106492, Lactobacillus psittaci DSM 15354, Lactobacillus psittaci JCM 11552, Lactobacillus psittaci LMG 21594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.