SHE46904.1 protein (Lactonifactor longoviformis)

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Known Interactions

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Predicted Interactions

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gene co-occurrence

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protein homology

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Score

SHE46904.1

Chemotaxis signal transduction protein. (146 aa)

Predicted Functional Partners:

SHE46941.1

0.999

SHE47032.1

0.999

SHE86530.1

0.992

SHE47085.1

0.991

SHE40009.1

0.990

SHE52994.1

0.990

SHF13957.1

0.990

SHF15330.1

0.990

SHE47013.1

0.989

SHF00302.1

0.972

Your Current Organism:

Lactonifactor longoviformis

NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE40009.1	SHE46904.1	SAMN02745158_00448	SAMN02745158_00552	PAS domain S-box-containing protein.	Chemotaxis signal transduction protein.	0.990
SHE40009.1	SHE46941.1	SAMN02745158_00448	SAMN02745158_00553	PAS domain S-box-containing protein.	Two-component system, chemotaxis family, sensor kinase CheA.	0.981
SHE40009.1	SHE47013.1	SAMN02745158_00448	SAMN02745158_00556	PAS domain S-box-containing protein.	Chemotaxis protein CheC.	0.884
SHE40009.1	SHE47032.1	SAMN02745158_00448	SAMN02745158_00557	PAS domain S-box-containing protein.	Methyl-accepting chemotaxis protein.	0.976
SHE40009.1	SHE47085.1	SAMN02745158_00448	SAMN02745158_00559	PAS domain S-box-containing protein.	Chemotaxis protein methyltransferase CheR.	0.941
SHE40009.1	SHE52994.1	SAMN02745158_00448	SAMN02745158_00788	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.995
SHE40009.1	SHE86530.1	SAMN02745158_00448	SAMN02745158_01811	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.995
SHE40009.1	SHF00302.1	SAMN02745158_00448	SAMN02745158_02232	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.997
SHE40009.1	SHF13957.1	SAMN02745158_00448	SAMN02745158_02642	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.995
SHE40009.1	SHF15330.1	SAMN02745158_00448	SAMN02745158_02709	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.994
SHE46904.1	SHE40009.1	SAMN02745158_00552	SAMN02745158_00448	Chemotaxis signal transduction protein.	PAS domain S-box-containing protein.	0.990
SHE46904.1	SHE46941.1	SAMN02745158_00552	SAMN02745158_00553	Chemotaxis signal transduction protein.	Two-component system, chemotaxis family, sensor kinase CheA.	0.999
SHE46904.1	SHE47013.1	SAMN02745158_00552	SAMN02745158_00556	Chemotaxis signal transduction protein.	Chemotaxis protein CheC.	0.989
SHE46904.1	SHE47032.1	SAMN02745158_00552	SAMN02745158_00557	Chemotaxis signal transduction protein.	Methyl-accepting chemotaxis protein.	0.999
SHE46904.1	SHE47085.1	SAMN02745158_00552	SAMN02745158_00559	Chemotaxis signal transduction protein.	Chemotaxis protein methyltransferase CheR.	0.991
SHE46904.1	SHE52994.1	SAMN02745158_00552	SAMN02745158_00788	Chemotaxis signal transduction protein.	PAS domain S-box-containing protein.	0.990
SHE46904.1	SHE86530.1	SAMN02745158_00552	SAMN02745158_01811	Chemotaxis signal transduction protein.	PAS domain S-box-containing protein.	0.992
SHE46904.1	SHF00302.1	SAMN02745158_00552	SAMN02745158_02232	Chemotaxis signal transduction protein.	Signal transduction histidine kinase.	0.972
SHE46904.1	SHF13957.1	SAMN02745158_00552	SAMN02745158_02642	Chemotaxis signal transduction protein.	PAS domain S-box-containing protein.	0.990
SHE46904.1	SHF15330.1	SAMN02745158_00552	SAMN02745158_02709	Chemotaxis signal transduction protein.	Signal transduction histidine kinase.	0.990

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

36

PPI enrichment p-value:

0.000885

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000160

Phosphorelay signal transduction system

11 of 92

1.71

4.3

4.83e-16

GO:0018106

Peptidyl-histidine phosphorylation

3 of 31

1.61

1.09

0.0050

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000155

Phosphorelay sensor kinase activity

10 of 51

1.92

5.32

5.86e-16

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016021

Integral component of membrane

10 of 1095

0.59

0.48

0.00065

GO:0005886

Plasma membrane

8 of 841

0.61

0.45

0.0054

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3961

Phosphorelay sensor kinase activity

7 of 17

2.24

5.47

1.03e-12

CL:3959

Phosphorelay sensor kinase activity, and PAS domain

8 of 28

2.09

5.34

1.31e-13

CL:3945

Protein histidine kinase activity, and Diguanylate cyclase

9 of 54

1.85

4.51

1.30e-13

CL:3926

Signaling, and Diguanylate cyclase

11 of 142

1.52

3.21

3.34e-14

CL:3962

Phosphorelay sensor kinase activity, and Taxis

4 of 12

2.15

2.86

1.51e-06

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02020

Two-component system

11 of 396

1.07

1.46

2.42e-10

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0597

Phosphoprotein

8 of 72

1.67

3.24

1.85e-10

KW-0175

Coiled coil

8 of 484

0.85

0.76

0.00020

KW-0418

Kinase

4 of 123

1.14

0.74

0.0113

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00388

His Kinase A (phosphoacceptor) domain

9 of 33

2.06

5.88

1.02e-15

SM00387

Histidine kinase-like ATPases

9 of 40

1.98

5.44

2.35e-15

SM00448

cheY-homologous receiver domain

9 of 49

1.89

4.94

8.09e-15

SM00086

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

3 of 13

1.99

1.87

0.00017

SM00091

PAS domain

3 of 21

1.78

1.57

0.00048

(more ...)

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