STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE47385.1ABC-type multidrug transport system, ATPase component. (292 aa)    
Predicted Functional Partners:
SHE47428.1
ABC-2 type transport system permease protein.
  
 0.964
SHF53297.1
iron(III) transport system ATP-binding protein.
 
  
 
0.905
SHE89116.1
ABC-2 type transport system permease protein.
 
 0.901
SHE36926.1
Putative ABC transport system ATP-binding protein.
 
    
0.894
SHE73125.1
ABC-2 family transporter protein.
 
 0.849
SHF39212.1
Sulfonate transport system ATP-binding protein.
 
     
0.831
SHE47447.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
     0.810
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
   
 
0.799
SHF30495.1
CAAX protease self-immunity.
  
 
 0.793
SHE86360.1
Hypothetical protein.
 
 0.792
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.