STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE50376.1HlyD family secretion protein. (610 aa)    
Predicted Functional Partners:
SHE50307.1
Putative ABC transport system permease protein.
 
  
 0.877
SHF53892.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 0.803
hisI
phosphoribosyl-ATP pyrophosphatase; In the C-terminal section; belongs to the PRA-PH family.
  
    0.694
SHF05127.1
Putative ABC transport system permease protein.
 
  
 0.682
SHE64188.1
Putative ABC transport system permease protein.
 
  
 0.670
SHE80091.1
Putative ABC transport system permease protein.
 
  
 0.669
SHE36906.1
Putative ABC transport system permease protein.
  
  
 0.625
SHE64172.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.625
SHE75304.1
Putative ABC transport system permease protein.
  
  
 0.625
SHF54776.1
Putative ABC transport system permease protein.
  
  
 0.625
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.