STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE51696.1ATP-binding cassette, subfamily B. (578 aa)    
Predicted Functional Partners:
potA-2
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
   
0.830
SHE51682.1
ATP-binding cassette, subfamily B.
 
    
0.826
SHE36926.1
Putative ABC transport system ATP-binding protein.
 
     
0.752
SHE51726.1
Lysophospholipase, alpha-beta hydrolase superfamily.
       0.752
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.752
SHE39411.1
ABC transporter.
 
     0.723
SHF33776.1
Rhodanese-related sulfurtransferase.
  
 
 0.623
SHE50262.1
Putative ABC transport system ATP-binding protein.
 
     
0.606
SHF32331.1
ATP-grasp domain-containing protein.
   
 0.565
SHE50002.1
Rhodanese-related sulfurtransferase.
   
 
 0.564
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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