STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE90185.1N6-adenosine-specific RNA methylase IME4; Belongs to the MT-A70-like family. (185 aa)    
Predicted Functional Partners:
SHE90086.1
NlpC/P60 family protein.
 
     0.895
SHE90046.1
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase.
 
     0.838
SHE90028.1
Protein of unknown function.
 
     0.832
SHE90165.1
PrgI family protein.
 
     0.815
SHE90102.1
DNA (cytosine-5)-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.804
SHE89881.1
Protein of unknown function.
 
     0.788
SHE90150.1
Type IV secretory pathway, VirB4 component.
       0.787
SHE90009.1
SH3 domain-containing protein.
 
     0.784
SHF58257.1
Restriction endonuclease BglII.
 
     0.775
SHE90127.1
Hypothetical protein.
       0.773
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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