STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF17003.1ABC-type transport system, involved in lipoprotein release, permease component. (824 aa)    
Predicted Functional Partners:
SHF16980.1
Putative ABC transport system ATP-binding protein.
 
 
 0.940
SHF16959.1
Signal transduction histidine kinase.
 
     0.890
SHE76020.1
Putative ABC transport system ATP-binding protein.
 
 
 0.851
SHE76039.1
Signal transduction histidine kinase.
  
     0.761
SHE79966.1
Putative ABC transport system ATP-binding protein.
 
 
 0.732
SHF16934.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.728
SHF04492.1
Putative ABC transport system ATP-binding protein.
 
 
 0.727
SHE69683.1
Putative ABC transport system ATP-binding protein.
 
 
 0.712
SHF54761.1
Putative ABC transport system ATP-binding protein.
 
 
 0.706
SHE75284.1
Putative ABC transport system ATP-binding protein.
 
 
 0.689
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.