STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF24538.14Fe-4S dicluster domain-containing protein. (66 aa)    
Predicted Functional Partners:
SHE30076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.846
SHF24588.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
 
  0.819
SHF17703.1
Sulfide dehydrogenase (flavoprotein) subunit SudA.
    
 0.765
SHF24556.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.764
SHF24578.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
  
 
  0.764
SHE40397.1
Putative selenate reductase.
  
 
 0.758
SHF29340.1
NADH-quinone oxidoreductase subunit F.
    
  0.758
SHF49162.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
  0.748
SHE80734.1
Cystathione beta-lyase.
   
 
  0.746
SHF17430.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
     
 0.740
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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