STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF32355.1D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (459 aa)    
Predicted Functional Partners:
SHF61130.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
 
0.817
SHE39983.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 
0.793
SHF54798.1
Transglycosylase.
   
 
 0.768
SHF23018.1
Glucan-binding domain-containing protein (YG repeat).
   
 
 0.764
SHF23043.1
Putative cell wall binding repeat-containing protein.
 
 
 
 0.764
SHE39879.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.710
SHF40593.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.710
SHF39074.1
Spore maturation protein B.
  
  
 0.587
SHF38044.1
Penicillin-binding protein 1A.
   
 
 0.574
SHF53396.1
Spore maturation protein A.
  
  
 0.571
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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