STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF38948.1Regulator of RNase E activity RraA. (229 aa)    
Predicted Functional Partners:
SHE30118.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 
 0.808
SHF38994.1
Sugar lactone lactonase YvrE.
 
     0.805
SHF38978.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
  0.778
ilvD-3
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.763
SHF49162.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.757
SHE96815.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
  
 0.704
SHF35841.1
Hypothetical protein.
 
  
 0.642
SHF45951.1
Amidohydrolase.
 
  
 0.633
SHF11067.1
Microcystin degradation protein MlrC, contains DUF1485 domain.
 
     0.594
SHE60109.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.590
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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