SHF43867.1 protein (Lactonifactor longoviformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHF43867.1

DNA-binding transcriptional regulator LsrR, DeoR family. (318 aa)

Predicted Functional Partners:

SHE74638.1

0.954

SHF43885.1

0.773

SHF39193.1

0.689

SHF22968.1

0.633

SHF43829.1

0.619

SHE74664.1

0.611

SHE67882.1

0.601

SHF10314.1

0.601

SHF39539.1

0.573

gpsA

0.502

Your Current Organism:

Lactonifactor longoviformis

NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE67882.1	SHF43867.1	SAMN02745158_01211	SAMN02745158_03738	Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.601
SHE74638.1	SHE74664.1	SAMN02745158_01421	SAMN02745158_01422	Dihydroxyacetone kinase DhaK subunit.	Dihydroxyacetone kinase, C-terminal domain.	0.999
SHE74638.1	SHF22968.1	SAMN02745158_01421	SAMN02745158_02960	Dihydroxyacetone kinase DhaK subunit.	Putative sugar-binding domain-containing protein.	0.434
SHE74638.1	SHF39539.1	SAMN02745158_01421	SAMN02745158_03576	Dihydroxyacetone kinase DhaK subunit.	Glycerol-1-phosphate dehydrogenase [NAD(P)+].	0.829
SHE74638.1	SHF43867.1	SAMN02745158_01421	SAMN02745158_03738	Dihydroxyacetone kinase DhaK subunit.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.954
SHE74638.1	gpsA	SAMN02745158_01421	SAMN02745158_02890	Dihydroxyacetone kinase DhaK subunit.	Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.833
SHE74664.1	SHE74638.1	SAMN02745158_01422	SAMN02745158_01421	Dihydroxyacetone kinase, C-terminal domain.	Dihydroxyacetone kinase DhaK subunit.	0.999
SHE74664.1	SHF22968.1	SAMN02745158_01422	SAMN02745158_02960	Dihydroxyacetone kinase, C-terminal domain.	Putative sugar-binding domain-containing protein.	0.434
SHE74664.1	SHF39539.1	SAMN02745158_01422	SAMN02745158_03576	Dihydroxyacetone kinase, C-terminal domain.	Glycerol-1-phosphate dehydrogenase [NAD(P)+].	0.841
SHE74664.1	SHF43867.1	SAMN02745158_01422	SAMN02745158_03738	Dihydroxyacetone kinase, C-terminal domain.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.611
SHE74664.1	gpsA	SAMN02745158_01422	SAMN02745158_02890	Dihydroxyacetone kinase, C-terminal domain.	Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.833
SHF10314.1	SHF43867.1	SAMN02745158_02522	SAMN02745158_03738	Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.601
SHF22968.1	SHE74638.1	SAMN02745158_02960	SAMN02745158_01421	Putative sugar-binding domain-containing protein.	Dihydroxyacetone kinase DhaK subunit.	0.434
SHF22968.1	SHE74664.1	SAMN02745158_02960	SAMN02745158_01422	Putative sugar-binding domain-containing protein.	Dihydroxyacetone kinase, C-terminal domain.	0.434
SHF22968.1	SHF39193.1	SAMN02745158_02960	SAMN02745158_03554	Putative sugar-binding domain-containing protein.	Predicted homoserine dehydrogenase, contains C-terminal SAF domain.	0.577
SHF22968.1	SHF39539.1	SAMN02745158_02960	SAMN02745158_03576	Putative sugar-binding domain-containing protein.	Glycerol-1-phosphate dehydrogenase [NAD(P)+].	0.402
SHF22968.1	SHF43867.1	SAMN02745158_02960	SAMN02745158_03738	Putative sugar-binding domain-containing protein.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.633
SHF22968.1	gpsA	SAMN02745158_02960	SAMN02745158_02890	Putative sugar-binding domain-containing protein.	Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.502
SHF39193.1	SHF22968.1	SAMN02745158_03554	SAMN02745158_02960	Predicted homoserine dehydrogenase, contains C-terminal SAF domain.	Putative sugar-binding domain-containing protein.	0.577
SHF39193.1	SHF43867.1	SAMN02745158_03554	SAMN02745158_03738	Predicted homoserine dehydrogenase, contains C-terminal SAF domain.	DNA-binding transcriptional regulator LsrR, DeoR family.	0.689