STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lexARepressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (206 aa)    
Predicted Functional Partners:
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.991
dinB
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.917
SHE61515.1
Site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family.
    
 0.900
SHF04762.1
DNA polymerase V.
  
 
 0.888
SHE68621.1
DNA repair protein RecN (Recombination protein N); May be involved in recombinational repair of damaged DNA.
   
  
 0.791
SHE48479.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
  
  
 0.628
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.610
SHF15478.1
TIGR00375 family protein.
    
 0.590
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.590
SHF50092.1
LysM domain-containing protein.
  
  
 0.588
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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