STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF62800.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (359 aa)    
Predicted Functional Partners:
SHE30076.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.741
SHF32560.1
comF family protein.
   
    0.612
SHE86609.1
Prephenate dehydrogenase.
  
    0.587
SHF44892.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
  
 0.571
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.569
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.532
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.532
SHE73302.1
Protein of unknown function.
  
  
 0.495
SHE39476.1
Phage integrase family protein.
  
     0.411
Your Current Organism:
Lactonifactor longoviformis
NCBI taxonomy Id: 1122155
Other names: L. longoviformis DSM 17459, Lactonifactor longoviformis DSM 17459
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.