STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF73299.1Isopentenyl-diphosphate delta-isomerase. (172 aa)    
Predicted Functional Partners:
SHF69950.1
Diphosphomevalonate decarboxylase.
 
 
 0.970
SHF32324.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 
 0.917
SHF73328.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
       0.829
SHF45644.1
Phytoene/squalene synthetase.
 
 
 0.715
SHF73359.1
Mannose-6-phosphate isomerase, type 1.
       0.676
SHF27887.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  
 0.597
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  
 0.597
SHF73382.1
Hypothetical protein.
       0.574
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 
 0.531
SHF73265.1
WD40-like Beta Propeller Repeat.
       0.518
Your Current Organism:
Leeuwenhoekiella marinoflava
NCBI taxonomy Id: 1122159
Other names: L. marinoflava DSM 3653, Leeuwenhoekiella marinoflava DSM 3653
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.