STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI45161.1Predicted transcriptional regulator, contains HTH domain. (387 aa)    
Predicted Functional Partners:
SHI45176.1
Tetratricopeptide repeat-containing protein.
  
    0.761
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
    
  0.716
SHJ20225.1
Type I restriction enzyme, S subunit.
  
    0.698
SHJ28331.1
Predicted permease.
 
    0.623
SHJ22279.1
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains.
 
    0.609
SHJ21063.1
AAA domain-containing protein, putative AbiEii toxin, Type IV TA system.
  
    0.531
SHJ43253.1
Hypothetical protein.
  
    0.531
SHI51714.1
Spore coat-associated protein S.
  
     0.526
SHI51664.1
Spore coat protein, CotS family.
  
     0.507
SHJ36372.1
Fic family protein.
 
  
  0.505
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.