STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI52330.1Small acid-soluble spore protein F (minor alpha/beta-type SASP). (56 aa)    
Predicted Functional Partners:
SHI52299.1
Spore germination protein.
 
   
 0.691
SHI52273.1
N-acetylmuramoyl-L-alanine amidase.
 
     0.600
SHI80025.1
Spore germination protein KC.
  
     0.599
SHI52219.1
Germination protein, Ger(x)C family.
 
     0.596
SHI52204.1
Spore germination protein.
 
     0.591
SHI52173.1
Spore germination protein.
 
     0.505
SHI76096.1
Spore germination protein.
  
     0.450
SHI79988.1
Spore germination protein (amino acid permease).
  
     0.440
SHI52247.1
Stage II sporulation protein R.
 
     0.437
SHI76735.1
Spore germination protein KA.
  
     0.413
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.