SHI80446.1 protein (Lutispora thermophila) - STRING interaction network

Nodes:

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

SHI80446.1

Zinc-ribbon family protein. (130 aa)

Predicted Functional Partners:

SHI80146.1

0.562

SHI38928.1

0.437

SHI79969.1

0.424

Your Current Organism:

Lutispora thermophila

NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI38928.1	SHI80446.1	SAMN02745176_00069	SAMN02745176_01417	AMMECR1 protein.	Zinc-ribbon family protein.	0.437
SHI79969.1	SHI80446.1	SAMN02745176_01392	SAMN02745176_01417	Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.	Zinc-ribbon family protein.	0.424
SHI80146.1	SHI80446.1	SAMN02745176_01401	SAMN02745176_01417	Hypothetical protein.	Zinc-ribbon family protein.	0.562
SHI80446.1	SHI38928.1	SAMN02745176_01417	SAMN02745176_00069	Zinc-ribbon family protein.	AMMECR1 protein.	0.437
SHI80446.1	SHI79969.1	SAMN02745176_01417	SAMN02745176_01392	Zinc-ribbon family protein.	Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.	0.424
SHI80446.1	SHI80146.1	SAMN02745176_01417	SAMN02745176_01401	Zinc-ribbon family protein.	Hypothetical protein.	0.562

Network Stats

number of nodes:

11

number of edges:

13

average node degree:

2.36

avg. local clustering coefficient:

0.855

expected number of edges:

11

PPI enrichment p-value:

0.264

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009306

Protein secretion

5 of 14

2.45

3.92

2.23e-08

GO:0071806

Protein transmembrane transport

5 of 28

2.14

3.43

6.46e-08

GO:0055085

Transmembrane transport

6 of 691

0.83

0.57

0.0092

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:15180

Mostly uncharacterized, incl. Type IV secretion-system coupling protein DNA-binding domain, and Domain of unknown function (DUF4913)

4 of 33

1.98

1.86

0.00017

CL:11689

Mostly uncharacterized, incl. BadF/BadG/BcrA/BcrD ATPase family, and Family 4 glycosyl hydrolase

3 of 13

2.26

1.73

0.00053

CL:15182

Mixed, incl. Type IV secretion-system coupling protein DNA-binding domain, and Domain of unknown function (DUF4913)

3 of 18

2.11

1.61

0.00076

CL:15183

Mixed, incl. Domain of unknown function (DUF4913), and Inhibition of nitric oxide production

2 of 11

2.15

0.9

0.0214

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03070

Bacterial secretion system

5 of 82

1.68

2.14

6.15e-06

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0043684

Type IV secretion system complex

5 of 5

2.89

5.34

1.10e-10

GOCC:0032991

Protein-containing complex

7 of 1101

0.7

0.44

0.0221

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF10412

Type IV secretion-system coupling protein DNA-binding domain

4 of 4

2.89

3.8

9.83e-08

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