Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHI91522.1 | SHI91568.1 | SAMN02745176_01768 | SAMN02745176_01770 | Transcriptional regulator, BadM/Rrf2 family. | Nitrogen fixation protein NifU. | 0.938 |
| SHI91522.1 | SHI91611.1 | SAMN02745176_01768 | SAMN02745176_01772 | Transcriptional regulator, BadM/Rrf2 family. | Hypothetical protein. | 0.508 |
| SHI91522.1 | iscS | SAMN02745176_01768 | SAMN02745176_01769 | Transcriptional regulator, BadM/Rrf2 family. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.997 |
| SHI91522.1 | mnmA | SAMN02745176_01768 | SAMN02745176_01771 | Transcriptional regulator, BadM/Rrf2 family. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.804 |
| SHI91568.1 | SHI91522.1 | SAMN02745176_01770 | SAMN02745176_01768 | Nitrogen fixation protein NifU. | Transcriptional regulator, BadM/Rrf2 family. | 0.938 |
| SHI91568.1 | SHI91611.1 | SAMN02745176_01770 | SAMN02745176_01772 | Nitrogen fixation protein NifU. | Hypothetical protein. | 0.508 |
| SHI91568.1 | iscS | SAMN02745176_01770 | SAMN02745176_01769 | Nitrogen fixation protein NifU. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.999 |
| SHI91568.1 | mnmA | SAMN02745176_01770 | SAMN02745176_01771 | Nitrogen fixation protein NifU. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.840 |
| SHI91611.1 | SHI91522.1 | SAMN02745176_01772 | SAMN02745176_01768 | Hypothetical protein. | Transcriptional regulator, BadM/Rrf2 family. | 0.508 |
| SHI91611.1 | SHI91568.1 | SAMN02745176_01772 | SAMN02745176_01770 | Hypothetical protein. | Nitrogen fixation protein NifU. | 0.508 |
| SHI91611.1 | SHI91630.1 | SAMN02745176_01772 | SAMN02745176_01773 | Hypothetical protein. | Uncharacterized protein YrrD, contains PRC-barrel domain. | 0.406 |
| SHI91611.1 | iscS | SAMN02745176_01772 | SAMN02745176_01769 | Hypothetical protein. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.508 |
| SHI91611.1 | mnmA | SAMN02745176_01772 | SAMN02745176_01771 | Hypothetical protein. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.561 |
| SHI91630.1 | SHI91611.1 | SAMN02745176_01773 | SAMN02745176_01772 | Uncharacterized protein YrrD, contains PRC-barrel domain. | Hypothetical protein. | 0.406 |
| iscS | SHI91522.1 | SAMN02745176_01769 | SAMN02745176_01768 | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Transcriptional regulator, BadM/Rrf2 family. | 0.997 |
| iscS | SHI91568.1 | SAMN02745176_01769 | SAMN02745176_01770 | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Nitrogen fixation protein NifU. | 0.999 |
| iscS | SHI91611.1 | SAMN02745176_01769 | SAMN02745176_01772 | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Hypothetical protein. | 0.508 |
| iscS | mnmA | SAMN02745176_01769 | SAMN02745176_01771 | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.939 |
| mnmA | SHI91522.1 | SAMN02745176_01771 | SAMN02745176_01768 | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | Transcriptional regulator, BadM/Rrf2 family. | 0.804 |
| mnmA | SHI91568.1 | SAMN02745176_01771 | SAMN02745176_01770 | tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | Nitrogen fixation protein NifU. | 0.840 |
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