STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ07580.1DNA-binding transcriptional regulator, GntR family. (219 aa)    
Predicted Functional Partners:
SHJ10255.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
  
 0.801
SHJ20325.1
DNA-binding transcriptional regulator, GntR family.
  
     0.775
SHJ07831.1
Transcriptional regulator, IclR family.
  
  
 0.628
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.603
SHJ07599.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
     
 0.558
SHI66619.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.546
SHJ07618.1
4Fe-4S dicluster domain-containing protein.
       0.488
SHJ07643.1
Endoglucanase.
       0.460
SHI57507.1
Sulfoacetaldehyde dehydrogenase.
    
 0.430
SHI66518.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
    
 0.430
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.