STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ08402.1Stage V sporulation protein B. (533 aa)    
Predicted Functional Partners:
SHJ08423.1
Tetrapyrrole methylase family protein / MazG family protein.
  
    0.738
SHI91695.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.726
SHI94275.1
Glutamine synthetase.
 
     0.667
SHI89311.1
tRNA (adenine22-N1)-methyltransferase.
  
     0.645
SHJ08457.1
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain.
  
    0.638
SHJ08383.1
AbrB family transcriptional regulator, stage V sporulation protein T.
     
 0.603
SHJ08469.1
Sporulation protein YabP.
  
  
 0.594
SHJ23703.1
Positive regulator of sigma(E), RseC/MucC.
  
     0.589
SHJ08433.1
DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.559
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.535
Your Current Organism:
Lutispora thermophila
NCBI taxonomy Id: 1122184
Other names: Clostridium sp. EBR-02E-0046, L. thermophila DSM 19022, Lutispora thermophila DSM 19022, Lutispora thermophila EBR46
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